Difference between revisions of "COVID-19"
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__NOTOC__ | __NOTOC__ | ||
− | ==SARS-CoV-2 | + | ==The Virus: SARS-CoV-2== |
{{Post-summary | {{Post-summary | ||
− | | summary-category = | + | | summary-category = |
| summary-title = [https://www.nytimes.com/interactive/2020/04/30/science/coronavirus-mutations.html How Coronavirus Mutates and Spreads] | | summary-title = [https://www.nytimes.com/interactive/2020/04/30/science/coronavirus-mutations.html How Coronavirus Mutates and Spreads] | ||
| summary-author = ''J. Corum'' and ''C. Zimmer'' | | summary-author = ''J. Corum'' and ''C. Zimmer'' | ||
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| summary-text = The virus that causes Covid-19 is currently spreading around the world. At least six other types of coronavirus are known to infect humans, with some causing the common cold and two causing outbreaks: SARS and MERS. | | summary-text = The virus that causes Covid-19 is currently spreading around the world. At least six other types of coronavirus are known to infect humans, with some causing the common cold and two causing outbreaks: SARS and MERS. | ||
}} | }} | ||
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<hr class="stylish2"> | <hr class="stylish2"> | ||
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==Treatment, Vaccine, Prevention== | ==Treatment, Vaccine, Prevention== | ||
− | [https://www.nytimes.com/interactive/2020/04/30/opinion/coronavirus-covid-vaccine.html How Long Will a Vaccine Really Take?] | + | {{Post-summary |
− | + | | summary-category = https://static01.nyt.com/newsgraphics/2020/04/08/opinion-covid-timeline/b006abb8ec5ece8b419f2ad57b88ceee5b576856/vaccine-success-Artboard_1.png | |
− | + | | summary-title = [https://www.nytimes.com/interactive/2020/04/30/opinion/coronavirus-covid-vaccine.html How Long Will a Vaccine Really Take?] | |
+ | | summary-author = ''S. A. Thompson'' | ||
+ | | summary-institution = NY Times | ||
+ | | summary-date = April 30, 2020 | ||
+ | | summary-text = A vaccine would be the ultimate weapon against the coronavirus and the best route back to normal life. Officials like Dr. Anthony S. Fauci, the top infectious disease expert on the US administration’s coronavirus task force, estimate a vaccine could arrive in at least 12 to 18 months. | ||
+ | }} | ||
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* [https://wolfr.am/COVID19Dashboard Wolfram] | * [https://wolfr.am/COVID19Dashboard Wolfram] | ||
* [https://www.worldometers.info/coronavirus/ Worldometers] | * [https://www.worldometers.info/coronavirus/ Worldometers] | ||
+ | * [https://www.wolframcloud.com/obj/examples/COVID19Gene Genetic Data for SARS-CoV-2] — <span class="is-all-small-caps il-sans-serif">Wolfram</span> | ||
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'''NOTE:''' [https://www.ecdc.europa.eu/en/publications-data/download-todays-data-geographic-distribution-covid-19-cases-worldwide Script] for downloading the CSV file into '''R''' | '''NOTE:''' [https://www.ecdc.europa.eu/en/publications-data/download-todays-data-geographic-distribution-covid-19-cases-worldwide Script] for downloading the CSV file into '''R''' | ||
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* [https://github.com/HopkinsIDD/ncov_incubation Real-time estimation of the novel coronavirus incubation time] | * [https://github.com/HopkinsIDD/ncov_incubation Real-time estimation of the novel coronavirus incubation time] | ||
* [https://www.rcsb.org/structure/6LU7 The crystal structure of COVID-19] | * [https://www.rcsb.org/structure/6LU7 The crystal structure of COVID-19] | ||
− | * [https://nyti.ms/31jGhk2 The Coronavirus Outbreak] — | + | * [https://nyti.ms/31jGhk2 The Coronavirus Outbreak] — <span class="is-all-small-caps">NY Times</span> |
* [https://flatten.ca/ Flatten] | * [https://flatten.ca/ Flatten] | ||
* [https://www.repidemicsconsortium.org/projects/ R Epidemics Consortium] | * [https://www.repidemicsconsortium.org/projects/ R Epidemics Consortium] | ||
− | + | * [https://www.endcoronavirus.org EndCoronavirus (ECV)] — <span class="is-all-small-caps">NECSI </span> | |
+ | * [https://github.com/soroushchehresa/awesome-coronavirus Awesome Coronavirus] | ||
+ | * [https://nextstrain.org/ncov Genomic epidemiology of novel coronavirus (hCoV-19)] | ||
+ | * [https://ncov.dxy.cn/ncovh5/view/en_pneumonia?from=dxy&source=&link=&share= DXY] | ||
+ | * [https://neherlab.org/covid19/ COVID-19 Scenarios] | ||
+ | * [https://penn-chime.phl.io Hospital Impact Model for Epidemics (CHIME)] | ||
+ | * [https://covid19.healthdata.org/projections IHME COVID-19 Projections] | ||
+ | * [http://epirisk.net/ EpiRisk] | ||
+ | * [https://covid19obs.fbk.eu/ Infodemics Observatory] | ||
+ | * [http://covid19.science.unimelb.edu.au/ 10 Day Forecast] — <span class="is-all-small-caps">University of Melbourne</span> | ||
+ | * [https://graphics.reuters.com/world-coronavirus-tracker-and-maps/index.html Global Tracker] — <span class="is-all-small-caps">REUTERS</span> | ||
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** [https://tinu.shinyapps.io/Flatten_the_Curve/ Flatten the Curve] by ''M. Höhle'' | ** [https://tinu.shinyapps.io/Flatten_the_Curve/ Flatten the Curve] by ''M. Höhle'' | ||
** [https://jgassen.shinyapps.io/tidycovid19/ Explore the Spread] by ''J. Gassen'' | ** [https://jgassen.shinyapps.io/tidycovid19/ Explore the Spread] by ''J. Gassen'' | ||
+ | ** [https://worldhealthorg.shinyapps.io/covid/ WHO Covid-19 Explorer] | ||
* Tableau | * Tableau | ||
** [https://www.tableau.com/covid-19-coronavirus-data-resources Data Hub] | ** [https://www.tableau.com/covid-19-coronavirus-data-resources Data Hub] | ||
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** [https://public.tableau.com/profile/marc.psaila#!/vizhome/Coronavirusfortableaupublic/Coronaviruscasesbycountry Progression] | ** [https://public.tableau.com/profile/marc.psaila#!/vizhome/Coronavirusfortableaupublic/Coronaviruscasesbycountry Progression] | ||
** [https://public.tableau.com/profile/daminda.de.silva#!/vizhome/corona-virusspreadingacrosstheworld/Dashboard33 Daily Updates] | ** [https://public.tableau.com/profile/daminda.de.silva#!/vizhome/corona-virusspreadingacrosstheworld/Dashboard33 Daily Updates] | ||
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NY Times - April 30, 2020 |
The coronavirus is an oily membrane packed with genetic instructions to make millions of copies of itself. The instructions are encoded in 30,000 letters of RNA — a, c, g and u — which the infected cell reads and translates into many kinds of virus proteins. |
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NY Times - April 3, 2020 |
The genome of the new coronavirus is less than 30,000 letters long, while the human genome is over 3 billion. Scientists have identified genes for as many as 29 proteins, which carry out a range of jobs from making copies of the coronavirus to suppressing the body’s immune responses. |
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NY Times - March 13, 2020 |
The virus that causes Covid-19 is currently spreading around the world. At least six other types of coronavirus are known to infect humans, with some causing the common cold and two causing outbreaks: SARS and MERS. |
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NY Times - April 30, 2020 |
A vaccine would be the ultimate weapon against the coronavirus and the best route back to normal life. Officials like Dr. Anthony S. Fauci, the top infectious disease expert on the US administration’s coronavirus task force, estimate a vaccine could arrive in at least 12 to 18 months. |
How do sources compare? by H. Ritchie et al., March 19, 2020 — Our World in Data
— There are three key sources providing regular updates of COVID-19 cases and deaths globally and by country.
Addendum
NOTE: Script for downloading the CSV file into R
1 #these libraries need to be loaded
2 library(utils)
3
4 #read the Dataset sheet into “R”. The dataset will be called "data".
5 data <- read.csv("https://opendata.ecdc.europa.eu/covid19/casedistribution/csv", na.strings = "", fileEncoding = "UTF-8-BOM")
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